If you bought them from Villa then they are authentic. The fakes when they released were not good. That's typically how Jordan 1's look on the inside. My pair from FTL is the same, except it has blue and tan stitching around the shoe instead of white like yours. Sometimes they use different color stitching at the bottom like they did with mine.
Yes, those two little holes should be there. The recent Jordan 1’s have two holes on the inside and the ones from a few years ago have one hole only.
This is my pair. It has two holes, the bottom hole was not cut correctly just like the one posted on this thread. The main difference is the color of the stitching around the shoe. Mine is like a gold color, I believe white is normally used, but other colors can be used as well like blue.